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A PCR based assay for the detection of enteric pathogens from HemoccultRTM cards

Posted on:2008-05-19Degree:M.P.HType:Thesis
University:The University of Texas School of Public HealthCandidate:Grimes, Kevin AnthonyFull Text:PDF
GTID:2444390005453679Subject:Biology
Abstract/Summary:
Background. Large field studies in travelers' diarrhea (TD) in multiple destinations are limited by the need to perform stool cultures on site in a timely manner. A method for the collection, transport and storage of fecal specimens that does not require immediate processing, refrigeration and is stable for months would be advantageous.;Objectives. Determine if enteric pathogen bacterial DNA can be identified in cards routinely used for evaluation of fecal occult blood.;Methods. U.S. students traveling to Mexico in 2005-07 were followed for occurrence of diarrheal illness. When ill, students provided a stool specimen for culture and occult blood by the standard method. Cards were then stored at room temperature prior to DNA extraction. A multiplex fecal PCR was performed to identify enterotoxigenic Escherichia coli and enteroaggregative E. coli (EAEC) in DNA extracted from stools and occult blood cards.;Results. Significantly more EAEC cases were identified by PCR done in DNA extracted from cards (49%) or from frozen feces (40%) than by culture followed by HEp-2 adherence assays (13%). Similarly more ETEC cases were detected in card DNA (38%) than fecal DNA (30%) or culture followed by hybridization (10%). Sensitivity and specificity of the card test was 75% and 62%, respectively, and 50% and 63%, respectively, when compared to EAEC and ETEC culture, respectively, and 53% and 51%, respectively compared to EAEC multiplex fecal PCR and 56% and 70%, respectively, compared to ETEC multiplex fecal PCR.;Conclusions. DNA extracted from fecal cards used for detection of occult blood is of use in detecting enteric pathogens.
Keywords/Search Tags:PCR, ETEC, Cards, DNA extracted, Occult, Enteric, EAEC, Culture
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