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Efficient and accurate simulation of integrate-and-fire neuronal networks in the hippocampus

Posted on:2008-06-13Degree:M.AType:Thesis
University:Rice UniversityCandidate:Kellems, Anthony RichardFull Text:PDF
GTID:2448390005454192Subject:Mathematics
Abstract/Summary:
This thesis evaluates a method of computing highly accurate solutions for network simulations of integrate-and-fire (IAF) neurons. Simulations are typically evolved using time-stepping, but since the IAF model is composed of linear first-order ODEs with hard thresholds, explicit solutions in terms of integrals of exponentials exist and can be approximated using quadrature. The technique presented here utilizes Clenshaw-Curtis quadrature to approximate these integrals to high accuracy. It uses the secant method to more precisely identify spike times, thus yielding more accurate solutions than do time-stepping methods. Additionally, modeling synaptic input with delta functions permits the quadrature method to be practical for simulating largescale networks. I determine general conditions under which the quadrature method is faster and more accurate than time-stepping methods. In order to make these methods accessible to other researchers, I introduce and develop software designed for simulating networks of IAF hippocampal cells.
Keywords/Search Tags:Accurate, IAF, Networks, Method
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