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Mass Spectrometric Analysis of Specificity and Inhibition of Group IVA Cytosolic Phospholipase A2 on Natural Membrane Phospholipids

Posted on:2016-10-09Degree:M.SType:Thesis
University:University of California, San DiegoCandidate:Chen, YuanFull Text:PDF
GTID:2474390017480327Subject:Biochemistry
Abstract/Summary:
Phospholipase A2 (PLA2) constitutes a superfamily of enzymes that is well-studied by the scientific community. PLA2s are membrane-associated enzymes that catalyze the hydrolysis of the ester bond at the sn-2 position of membrane phospholipids liberating free fatty acids, predominantly arachidonic acid (AA). The PLA 2 superfamily consists of 16 groups and numerous subgroups and they can be considered as six major types: the secreted (sPLA2), the cytosolic (cPLA2), the calcium-independent (iPLA2), the platelet-activating factor acetylhydrolase (PAF-AH), lysosomal PLA 2 (LPLA2), and the adipose-PLA (AdPLA).;The human Group IVA cPLA2 (GIVA cPLA2) was cloned and sequenced from U937 cells in 1999. This enzyme contains 749 amino acids and has a molecular weight of 85.2 kDa. The crystal structure of the enzyme was resolved in 1999 and was found to contain an N-terminal C2 domain and a C-terminal catalytic domain. GIVA cPLA2 is of important biological relevance and involved at the earliest stage of inflammation since through its specificity for AA at the sn-2 position, it is the main AA provider for the eicosanoid biosynthetic pathway. Understanding the function of the enzyme is vital to find new ways to modulate inflammatory diseases in contrast to inhibiting traditional downstream pathways.;In this study, we have designed a liquid chromatography/mass spectrometry (LC/MS) high-throughput assay to test the specificity of GIVA cPLA2 toward different substrates. We tested various natural phospholipid substrates and found a preference for GIVA cPLA2 for 1-palmitoyl-2-arachidonoyl- sn-glycero-3-phosphocholine (PAPC). We also validated the assay for determining inhibitors constants and potency using commercially available inhibitors.
Keywords/Search Tags:GIVA cpla2, Specificity
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