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Characterization of RNA demethylases

Posted on:2014-08-29Degree:Ph.DType:Thesis
University:The University of ChicagoCandidate:Zheng, GuanqunFull Text:PDF
GTID:2454390008461236Subject:Biochemistry
Abstract/Summary:
More than 100 structurally distinct RNA modifications have been identified in all kingdoms of life. These post-transcriptional modifications are widely present in various RNAs, including ribosomal RNA (rRNA), transfer RNA (tRNA), messenger RNA (mRNA), long non-coding RNA (lncRNA), etc. We have identified a new mammalian RNA demethylase, ALKBH5, which is able to remove the methyl group of m6A from RNA both in vitro and in vivo. The ALKBH5 protein colocalizes with nuclear speckles where pre-mRNA processing occurs. This protein is actively involved in mRNA export regulation, in which its demethylation activity seems to play an important role, as well as in RNA synthesis. A knockout of the Alkbh5 gene in mice resulted in impaired male fertility due to compromised spermatogenesis. Importantly, increased m6A levels were observed in mRNA isolated from the Alkbh5 knockout mouse organs compared to those from wild-type littermates. RNA-Seq results indicate aberrant gene expression in spermatogenic cells of the seminoferous tubulus of testes from Alkbh5 deficient mice, thereby showing that the loss of the m6A demethylase influences gene expression which in turn leads to defects in spermatogenesis and increased apoptosis of meiotic cells. Thus, the discovery of FTO and this new RNA demethylase strongly suggests that the methylation of RNA, like DNA and histone modifications, is dynamically regulated and plays broad roles in mammalian cells.
Keywords/Search Tags:RNA demethylase, Modifications, ALKBH5
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