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Cloning And Sequence Analysia Of Cytb And CR Gene In2Gobiidae Fishes

Posted on:2013-11-11Degree:MasterType:Thesis
Country:ChinaCandidate:Y XiangFull Text:PDF
GTID:2233330371998454Subject:Farming
Abstract/Summary:PDF Full Text Request
The complete sequences of cytb genes in Acanthogobius hasta andOdontamblyopus rubicundus were amplified, cloned and sequenced. The cytb gene ineach species was1141bp in length. Comparing obtained sequences,266nucleotidevariation sites were detected. Transitions were observed to more than transversions,and most of the base substitutions occurred at the third locus of the codon. Incombination with complete cytb sequences of Gobiidae fishes recorded in GenBank,the genetic distance among10Gobiidae species calculated by using kimura-2parameters model ranged from0.118to0.330. The shortest distance occurred betweenNeogobius kessleri and Neogobius gymnotrachelus, being0.118, while the longestone between N. kessleri and A. hasta, being0.330. The phylogenetic analysis basedon cytb gene sequence using NJ method suggested that the10Gobiidae fishes weredivided into three main groups, O. rubicundus and A. hasta were merged into a clade,and had a relative far genetic distance to the other8species of Gobiidae.Kimura-based dual-parameter method to calculate the genetic distance of12species of goby species.12types of genetic distance between0.0170~0.5704, thelarge genetic gap between the various species can be seen. Kong goby and small longarm goby genetic distance (0.5704), in the goby Branch Kong goby and the long armof goby genetic relationship compared with other animal is far away. LargeRhinogobius minimum Mingtan Rhinogobius genetic distance,0.01712kinds ofgoby Division is divided into three main groups. Evolution Kong goby fish is paintedwith a large bomb earlier differentiation of species and the genetic distance betweenthem is relatively recent, with the rest of the goby is a phylogenetic tree exist farther.Mingtan Rhinogobius large Rhinogobius, Ziling Rhinogobius, green spot fine spinegoby together formed the second groups, indicating that these four goby with othergobies compared to There are relatively close genetic relationship. The yellow finthorn goby goby fish gather, long palate mud shrimp tiger fish, with bristle Ji gobies,Rockwell long arm of gobies and small long arm shrimp tiger fish were clustered intoa barbed hair tail, and finally together again as one, forming the third groups,indicating relatively close genetic relationship, may be late in the evolutionary processdifferentiation.
Keywords/Search Tags:Cobiidae, cytb, sequence analysis, phylogeny Genetic, distance, evolution, of kinship
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