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Evaluation of the halogen bond and the salt bridge interactions using the molecular torsion balance

Posted on:2011-01-01Degree:Ph.DType:Dissertation
University:University of PittsburghCandidate:Keyser, Sandra KFull Text:PDF
GTID:1442390002456251Subject:Chemistry
Abstract/Summary:PDF Full Text Request
A molecular torsion balance was synthesized to study the halogen bond in nonpolar and polar solvents. The folding energies were found to be between -0.2 and -0.3 kcal/mol in deuterochloroform. The strength of the halogen bond decreased in the following order: Cl ∼ Br > I, which is contrary to the computationally predicted order, I > Br > Cl. This reversed trend may be due to the gauche effect and/or simultaneous steric effects specific to our model system.;Three different functionalities, an alcohol, a carbamate, and an amide, were used as the halogen bond acceptors. The amide gave among the highest folding ratios, indicative of the strength of the halogen bond with bromide or chloride. Solvent studies were performed on the brominated torsion balance as well as a hydroxy analog to compare the hydrogen and halogen bonding interactions. Based on the solvent data, it takes more water to obstruct a halogen bond compared to a hydrogen bond. The folding energies were also compared to several solvent parameters.;A molecular torsion balance was also successfully synthesized to study the solvent exposed salt bridge interaction in water and in several buffer solutions. We found that the folding energies varied between -0.3 to -0.5 kcal/mol for the ammonium-carboxylate and guanidinium-carboxylate interaction when exposed to solvent; unequivocally, salt bridges that are exposed to solvent are stabilizing. Temperature is negligible whereas ionic strength has a weak but experimentally significant effect on the strength of the salt bridge interaction. The only measurable change in the folding ratios came from adjusting the pD of the buffer solutions.
Keywords/Search Tags:Halogen bond, Torsion balance, Molecular torsion, Salt bridge, Folding, Interaction, Solvent
PDF Full Text Request
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